PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g078340.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 206aa    MW: 24239.7 Da    PI: 9.8251
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g078340.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.11.2e-32261232102
                         HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
        HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                         Fl+k+y++le      ++++ +++sw+ +gn fvv+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++         weF+h +F
  Sopim02g078340.0.1  26 FLSKTYDLLEeqeeenSNRNIKVVSWNGEGNGFVVWCPDEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFHHGKF 107
                         9*********5554433366789************************************************999.........******** PP

                         XXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  87 kkgkkellekikrkks 102
                         +kg ++ll +i rkk 
  Sopim02g078340.0.1 108 QKGCRHLLAEITRKKC 123
                         *************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3418115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-3922121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-2723121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2926121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MATDDNRNIH RKIGRSTTRT KCPAPFLSKT YDLLEEQEEE NSNRNIKVVS WNGEGNGFVV  60
WCPDEFSEVM LPKYFKHNNF SSFIRQLNTY GFKKVASKRW EFHHGKFQKG CRHLLAEITR  120
KKCEPSVFPT YLNPSKKSTL LLATNNNDQE NTITRQHLME ENQNLKKERM ELQMQIAHFK  180
TLEMKLLQCL SQCVENPHNK TRRLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B6e-16221212105Heat shock factor protein 2
5d8l_B6e-16221212105Heat shock factor protein 2
5d8l_D6e-16221212105Heat shock factor protein 2
5d8l_F6e-16221212105Heat shock factor protein 2
5d8l_H6e-16221212105Heat shock factor protein 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265130.0AC226513.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0005F12, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232865.11e-154PREDICTED: heat stress transcription factor B-2a-like
TrEMBLK4B9581e-154K4B958_SOLLC; Uncharacterized protein
STRINGSolyc02g078340.2.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-38heat shock transcription factor B2A